Thank you! Uma Chandran From: Ian Donaldson [mailto:ian.donald...@manchester.ac.uk] Sent: Wednesday, March 12, 2014 5:04 AM To: Chandran, Uma; galaxy-user@lists.bx.psu.edu Subject: RE: [galaxy-user] can galaxy analyze SOLiD XSQ dataset except csfasta/qual data?
Hi Uma, If you look under 'NGS Mapping' there is 'Map with Bowtie for SOLiD' and 'Map with BWA for SOLiD' They take fastq, but you can use 'NGS: QC and manipulation' > 'Convert' to generate a fastq file from fastqc and qual files. Or at least you could for SOLiD4 files. Ian ________________________________ From: galaxy-user-boun...@lists.bx.psu.edu<mailto:galaxy-user-boun...@lists.bx.psu.edu> [galaxy-user-boun...@lists.bx.psu.edu] on behalf of Chandran, Uma [chandra...@upmc.edu] Sent: 11 March 2014 13:14 To: galaxy-user@lists.bx.psu.edu<mailto:galaxy-user@lists.bx.psu.edu> Subject: Re: [galaxy-user] can galaxy analyze SOLiD XSQ dataset except csfasta/qual data? Are there mappers for SoLiD 5500 on Galaxy? If so, do they take csfasta files as input? Thanks Uma Chandran
___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
