So it seems to be related to the default python installation 2.7.6.
I removed my updated version and now I cant even install gc3pie :
python install.py -D -a openstack
Traceback (most recent call last):
File "install.py", line 61, in <module>
import logging
File "/usr/local/lib/python2.7/logging/__init__.py", line 26, in <module>
import sys, os, time, cStringIO, traceback, warnings, weakref, collections
File "/usr/local/lib/python2.7/weakref.py", line 14, in <module>
from _weakref import (
ImportError: cannot import name _remove_dead_weakref
ttecadm@IMLS-55K45-p01:~/Repos/gc3pie$ python -V
> On 14 Aug 2018, at 12:16, David Dreher <david.dre...@uzh.ch> wrote:
>
> So I also tried installing gc3pie with an anaconda python built but this
> wouldn’t even install:
>
> ==========================
> GC3Pie installation script
> ==========================
>
> This script installs *development version* of GC3Pie in
> '/home/ttecadm/gc3pie'.
>
> If you encounter any problem running this script, please contact
> the GC3Pie team by sending an email to gc3pie@googlegroups.com.
>
> Remember to attach the full output of the script, in order to help us
> to identify the problem.
>
> Installation info:
>
> Destination directory: /home/ttecadm/gc3pie
> Overwrite existing dir: ask
> Python executable: /home/ttecadm/anaconda2/bin/python
> Ask for confirmation: yes
> Install unreleased code: yes
> Install gc3apps: yes
> Optional features: ['openstack']
> Installer script version: 2.0.3
>
>
> Are you ready to continue? [Y/n]
> <GC3Pie install> INFO: Applying workaround for Anaconda Python's
> incompatibility with virtualenv ...
> <GC3Pie install> INFO: /home/ttecadm/anaconda2/lib/libpython2.7.so ->
> /home/ttecadm/gc3pie/lib/libpython2.7.so
> <GC3Pie install> INFO: /home/ttecadm/anaconda2/lib/libpython2.7.so.1.0 ->
> /home/ttecadm/gc3pie/lib/libpython2.7.so.1.0
>
> WARNING
> =======
>
>
> Anaconda Python detected! I'm creating the virtual environment with a
> '--system-site-packages' option, to let GC3Pie programs use all the
> libraries that come bundled with Anaconda. If this leads to errors
> related to 'setuptools', 'distribute' or 'pip', then please report a
> bug to the GC3Pie mailing list gc3pie@googlegroups.com
>
>
>
> Do you still want to proceed? [Y/n]
> Already using interpreter /home/ttecadm/anaconda2/bin/python
> New python executable in /home/ttecadm/gc3pie/bin/python
> Installing pip, wheel...done.
> <GC3Pie install> INFO: Created Python virtual environment in
> '/home/ttecadm/gc3pie'
> mode of \u2018/home/ttecadm/gc3pie/bin/pip\u2019 retained as 0755 (rwxr-xr-x)
> <GC3Pie install> INFO: Installed Anaconda's version of `pip` into the
> virtual env
> <GC3Pie install> INFO: Trying to install or upgrade setuptools ...
> <GC3Pie install> INFO: Downloaded setuptools-40.0.0.zip from PyPI; now
> installing it ...
> tar: This does not look like a tar archive
> tar: Skipping to next header
> gzip: stdin has more than one entry--rest ignored
> tar: Child returned status 2
> tar: Error is not recoverable: exiting now
>
> ====================================================
> GC3Pie install: ERROR: Failed to install the latest version of Python
> 'setuptools'
> ====================================================
>
>
> The required Python package 'setuptools' could not be installed.
>
> Please get in touch with the GC3Pie developers at the email address
> gc3pie@googlegroups.com to get help with this error.
>
>
> If the above does not help you solve the issue, please contact the
> GC3Pie team by sending an email to gc3pie@googlegroups.com
> (mailing-list subscription required). Include the full output of this
> script to help us identifying the problem.
>
> Aborting installation!
>
>
>
>
>> On 14 Aug 2018, at 12:05, David Dreher <david.dre...@uzh.ch> wrote:
>>
>> I have a machine running Linux Mint with a fresh python 2.7.14 with pip 18.0
>> Importing gc3pie library fails with the following traceback:
>>
>>>> py.importlib.import_module('MatlabSession')
>> Error using weakref><module> (line 14)
>> Python Error: ImportError: cannot import name _remove_dead_weakref
>> Error in __init__><module> (line 26)
>> import sys, os, time, cStringIO, traceback, warnings, weakref, collections
>> Error in __init__><module> (line 49)
>> import logging
>> Error in MatlabSession><module> (line 9)
>> from gc3libs import Application, create_engine, ANY_OUTPUT
>> Error in __init__>import_module (line 37)
>> __import__(name)
>>
>>
>> I have found a selection of references to this error, but no clear solution
>> for me.
>> Interestingly I get the same error when I tried to run gc3pie on macOS
>> earlier, but I thought this was due to the unsupported nature of macOS.
>> One of the more direct recommended solutions are: to recreate the
>> virtualenv, or reinstall python. I tried the second and I don’t think I can
>> do the second with gc3pie right?
>>
>> Refs:
>> https://github.com/pypa/pip/issues/5240
>> https://github.com/pyenv/pyenv/issues/1141
>> https://github.com/pypa/pip/issues/5080
>> https://github.com/pypa/pip/pull/5149
>>
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