I'm having similar issues with getting height from after using gdalwarp to transform SRTM elevation model data from WGS84 (EPSG:4326) to Mercator (EPSG:3857) similar to this Stackexchange question: http://gis.stackexchange.com/questions/142154/issues-with-getting-the-height-from-srtm-gdalwarp-wgs84epsg4326-to-mercatore
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