Dear GDAL developers,
I'm trying to build gdal with support to the Kakadu library. My problems
occur both with gdal 2.0.2 as well which what I checked out from github.
I have configured a minimal example:
./configure --prefix $prefix_opt \
--with-openjpeg=no --with-jasper=no \
--with-ecw=no \
--with-libtiff=no --without-libtool \
--with-hdf4=no --with-hdf5=no --with-netcdf=no \
--with-geotiff=internal \
--with-grass=no --with-sqlite3=no \
--with-kakadu=/misc/fluo6/andre/projekte/install_py_et_al/python_GFZ/opt
--with-pic \
--with-python=$prefix_python/bin/python \
Output:
GDAL is now configured for x86_64-pc-linux-gnu
Installation directory:
/misc/fluo6/andre/projekte/install_py_et_al/python_GFZ/opt
C compiler: gcc -fPIC -O3 -fPIC
C++ compiler: g++ -g -O2 -fPIC
LIBTOOL support: no
LIBZ support: external
LIBLZMA support: no
cryptopp support: no
GRASS support: no
CFITSIO support: no
PCRaster support: internal
LIBPNG support: external
DDS support: no
GTA support: no
LIBTIFF support: external (BigTIFF=yes)
LIBGEOTIFF support: internal
LIBJPEG support: external
12 bit JPEG: no
12 bit JPEG-in-TIFF: no
LIBGIF support: external
OGDI support: no
HDF4 support: no
HDF5 support: no
Kea support: no
NetCDF support: no
Kakadu support: yes
JasPer support: no
OpenJPEG support: no
ECW support: no
MrSID support: no
MrSID/MG4 Lidar support: no
MSG support: no
GRIB support: yes
EPSILON support: no
WebP support: no
cURL support (wms/wcs/...):yes
PostgreSQL support: yes
MRF support: yes
MySQL support: no
Ingres support: no
Xerces-C support: yes
NAS support: yes
Expat support: yes
libxml2 support: no
Google libkml support: no
ODBC support: yes
PGeo support: yes
FGDB support: no
MDB support: no
PCIDSK support: internal
OCI support: no
GEORASTER support: no
SDE support: no
Rasdaman support: no
DODS support: no
SQLite support: no
PCRE support: yes
SpatiaLite support: no
DWGdirect support no
INFORMIX DataBlade support:no
GEOS support: yes
QHull support: internal
Poppler support: no
Podofo support: no
PDFium support: no
OpenCL support: no
Armadillo support: no
FreeXL support: yes
SOSI support: no
MongoDB support: no
SWIG Bindings: python
Statically link PROJ.4: no
enable OGR building: yes
enable GNM building: no
enable pthread support: yes
enable POSIX iconv support:yes
hide internal symbols: no
After calling make, it throws an error:
make[1]: Entering directory
`/misc/fluo6/andre/projekte/install_py_et_al/tmp/gdal/gdal-2.0.2/github/gdal/gdal/apps'
g++ gdalinfo_bin.o
-L/misc/fluo6/andre/projekte/install_py_et_al/tmp/gdal/gdal-2.0.2/github/gdal/gdal
-lgdal -lfreexl -L/usr/lib64 -lgeos_c -lodbc -lodbcinst -lexpat
-lxerces-c -lpthread -lgif -ljpeg -Lno/lib -ltiff -lpng
-L/usr/lib/postgresql92/lib64 -lpq -lz -lpthread -lm -lrt -ldl
-L/misc/fluo6/andre/projekte/install_py_et_al/python_GFZ/opt/lib -lkdu
-lpcre -lcurl -o gdalinfo
/misc/fluo6/andre/projekte/install_py_et_al/tmp/gdal/gdal-2.0.2/github/gdal/gdal/libgdal.so:
undefined reference to `kd_supp_simd::avx2_horz_resample_float(int,
float*, float*, unsigned int, unsigned int, unsigned int, int, void**,
int, int, int)'
/misc/fluo6/andre/projekte/install_py_et_al/tmp/gdal/gdal-2.0.2/github/gdal/gdal/libgdal.so:
undefined reference to
`kd_supp_simd::avx2_interleaved_transfer_fix16_to_bytes(void const*,
void const*, void const*, void const*, int, int, int, int, unsigned
char*, int, unsigned int, unsigned int)'
/misc/fluo6/andre/projekte/install_py_et_al/tmp/gdal/gdal-2.0.2/github/gdal/gdal/libgdal.so:
undefined reference to
`kd_supp_simd::avx2_convert_and_copy_to_fix16(void const**, int const*,
int const*, int, int, int, void*, int, int, int)'
/misc/fluo6/andre/projekte/install_py_et_al/tmp/gdal/gdal-2.0.2/github/gdal/gdal/libgdal.so:
undefined reference to
`kd_supp_simd::avx2_transfer_fix16_to_bytes_gap1(void const*, int, int,
int, int, void*, int, int, bool, float)'
/misc/fluo6/andre/projekte/install_py_et_al/tmp/gdal/gdal-2.0.2/github/gdal/gdal/libgdal.so:
undefined reference to `kd_supp_simd::avx2_vert_resample_float(int,
float**, float*, void*, int)'
/misc/fluo6/andre/projekte/install_py_et_al/tmp/gdal/gdal-2.0.2/github/gdal/gdal/libgdal.so:
undefined reference to `kd_supp_simd::avx2_horz_resample_fix16(int,
short*, short*, unsigned int, unsigned int, unsigned int, int, void**,
int, int, int)'
/misc/fluo6/andre/projekte/install_py_et_al/tmp/gdal/gdal-2.0.2/github/gdal/gdal/libgdal.so:
undefined reference to `kd_supp_simd::avx2_hshuf_fix16_2tap_expand(int,
short*, short*, unsigned int, unsigned int, unsigned int, int, void**,
int, int, int)'
/misc/fluo6/andre/projekte/install_py_et_al/tmp/gdal/gdal-2.0.2/github/gdal/gdal/libgdal.so:
undefined reference to `kd_supp_simd::avx2_white_stretch(short const*,
short*, int, int)'
/misc/fluo6/andre/projekte/install_py_et_al/tmp/gdal/gdal-2.0.2/github/gdal/gdal/libgdal.so:
undefined reference to `kd_supp_simd::avx2_vert_resample_fix16(int,
short**, short*, void*, int)'
/misc/fluo6/andre/projekte/install_py_et_al/tmp/gdal/gdal-2.0.2/github/gdal/gdal/libgdal.so:
undefined reference to `kd_supp_simd::avx2_hshuf_float_2tap_expand(int,
float*, float*, unsigned int, unsigned int, unsigned int, int, void**,
int, int, int)'
/misc/fluo6/andre/projekte/install_py_et_al/tmp/gdal/gdal-2.0.2/github/gdal/gdal/libgdal.so:
undefined reference to
`kd_supp_simd::avx2_transfer_fix16_to_bytes_gap4(void const*, int, int,
int, int, void*, int, int, bool, float)'
collect2: error: ld returned 1 exit status
make[1]: *** [gdalinfo] Error 1
make[1]: Leaving directory
`/misc/fluo6/andre/projekte/install_py_et_al/tmp/gdal/gdal-2.0.2/github/gdal/gdal/apps'
make: *** [apps-target] Error 2
I did communicate with the folks over at Kakadu and Professor David
Taubman gave the following comment:
>Looks like the GDAL build is not building or including the Kakadu
"avx2_region_decompressor.o" file.
>You will find this referenced in the standard Kakadu makefiles. This
makes sense since that file
>was added after Kakadu version 7.5 was released. I have not looked
into the GDAL build system,
>but it may be selectively building or including Kakadu object files
rather than using Kakadu's
>build environment to do so. The preferred way to include all the
Kakadu API's is to link against
>both libkdu_v77R.o and libkdu_a77R.o, where the latter is built by the
"managed" makefiles.
>
>Anyway, it may be that all you have to do is add
"avx2_region_deocmpressor.o" (and possibly
>"avx2_region_compositor.o") to the GDAL build environment.
I checked the fmts/o directory and copied all *.o files from kakadu into
this directory. Then, called make again which ran without errors. When
using python, I was able to read a jpeg200 image with gdal. However,
this worked only with 2.0.2, using the version from github, the gdal
module was missing from python.
So it seems there is a bug in the gdal build system when compiling with
kakadu 7.7.1
Kind Regards, André Hollstein
--
Dr. André Hollstein
Sektion 1.4 Fernerkundung
Tel.: +49 (0)331/288-28969
Fax: +49 (0)331/288-28969
E-Mail: [email protected]
___________________________________
Helmholtz-Zentrum Potsdam
Deutsches GeoForschungsZentrum GFZ
Stiftung des öff. Rechts Land Brandenburg
Telegrafenberg, 14473 Potsdam
Haus 17, Raum 20.23
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