Thanks for the answer - but the problem was a short coming in the detection of the library location as Even pinted out.
Thanks, Rainer Andrew C Aitchison <[email protected]> writes: > Rainer, > > I'm not very familiar with Debian or apt-get, but does installing libhdf5 > perhaps with something like > apt-get install -y --no-install-recommends libhdf5 > help ? > If so, the "--no-install-recommends" may be making things harder for you. > > Alternatively, the problem *might* be that the commented lines (##) > do not end with a backslash (/). > > On Fri, 27 Jan 2017, Rainer M Krug wrote: > >> Hi >> >> We am working on a docker image for spatial analysis using R (see >> https://github.com/rocker-org/rocker/issues/213 for the discussion) and >> I am struggling to get gdal compiled with HDF5 support. >> >> I install the following dependencies: >> >> --8<---------------cut here---------------start------------->8--- >> apt-get install -y --no-install-recommends \ >> libproj-dev \ >> libgeos-dev \ >> ## hdf4 >> libhdf4-alt-dev \ >> ## hdf5 >> libhdf5-dev \ >> libhdf5-serial-dev \ >> zlib1g-dev \ >> ## sqlite >> libsqlite3-dev \ >> ## freexl >> libfreexl.dev \ >> ## odbc >> unixodbc-dev \ >> ## diverse >> libexpat1-dev \ >> libxerces-c-dev \ >> libnetcdf-dev \ >> libudunits2-dev \ >> ## KML >> libkml-dev --8<---------------cut >> here---------------end--------------->8--- >> >> and use the following configure options >> >> --8<---------------cut here---------------start------------->8--- >> ./configure \ >> --with-geotiff \ >> --with-sqlite3 \ >> --with-freexl \ >> --with-spatialite \ >> --with-geos \ >> --with-hdf4 \ >> --with-hdf5 \ >> --with-libjson-c \ >> --with-netcdf \ >> --with-odbc \ >> --with-curl \ >> --without-grass \ >> --without-libgrass >> --8<---------------cut here---------------end--------------->8--- >> >> But I get the following message in the configure output >> >> ,---- >> | checking for H5Fopen in -lhdf5... no >> `---- >> >> which than results in >> >> ,---- >> | HDF5 support: no >> `---- >> >> Any ideas what I am missing? >> >> Thanks, >> >> Rainer >> >> -- >> Rainer M. Krug >> email: Rainer<at>krugs<dot>de >> PGP: 0x0F52F982 >> _______________________________________________ >> gdal-dev mailing list >> [email protected] >> https://lists.osgeo.org/mailman/listinfo/gdal-dev > -- Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany) Tel : +33 - (0)9 53 10 27 44 Cell: +33 - (0)6 85 62 59 98 Fax : +33 - (0)9 58 10 27 44 Fax (D): +49 - (0)3 21 21 25 22 44 email: [email protected] Skype: RMkrug PGP: 0x0F52F982
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