Hello:

I'm using xarray and rioxarray in python to create a DataSet then export to Netcdf. After saving, when I check the exported files with gdalinfo using GDAL 3.2, I see the correct extent. However, when using GDAL >=3.4 (i.e in a conda env) it seems that the extents are lost, and the NetCDF dimensions appear instead. This causes the resulting NetCDF to appear at coords (0,0) - the wrong place - in QGIS (on a system with the newer GDAL).


Here is the output with my system installed GDAL:


micha@RMS:Kinneret$ gdalinfo --version
GDAL 3.2.2, released 2021/03/05
micha@RMS:Kinneret$ gdalinfo  NETCDF:"Kinneret_velocity.nc":v | grep -A 4 Corner                                   
Warning 1: dimension #2 (x) is not a Longitude/X dimension.
Warning 1: dimension #1 (y) is not a Latitude/Y dimension.
Warning 1: dimension #0 (z) is not a Time or Vertical dimension.
Corner Coordinates:
Upper Left  (  735758.000, 3644806.000) ( 35d31'15.70"E, 32d54'57.98"N)
Lower Left  (  735758.000, 3621606.000) ( 35d30'54.46"E, 32d42'25.30"N)
Upper Right (  754558.000, 3644806.000) ( 35d43'18.74"E, 32d54'42.80"N)

Lower Right (  754558.000, 3621606.000) ( 35d42'55.82"E, 32d42'10.25"N) 


However, in my conda environment, with a newer GDAL:


micha@RMS:Kinneret$ conda activate geo
(geo) micha@RMS:Kinneret$ gdalinfo --version
GDAL 3.5.2, released 2022/09/02
(geo) micha@RMS:Kinneret$ gdalinfo  NETCDF:"Kinneret_velocity.nc":v | grep -A 4 Corner
Warning 1: dimension #2 (x) is not a Longitude/X dimension.
Warning 1: dimension #1 (y) is not a Latitude/Y dimension.
Warning 1: dimension #0 (z) is not a Time or Vertical dimension.
Corner Coordinates:
Upper Left  (    0.0,    0.0)
Lower Left  (    0.0,   58.0)
Upper Right (   47.0,    0.0)
Lower Right (   47.0,   58.0)

What do I need to add to the xarray Dataset so that the newer GDAL gets the correct extent?

In both cases all the "grid_mapping" metadata entries point to "spatial_ref", and the full spatial_ref details are available in the NetCDF file.


(Note: double posted to GIS.stackexchange at https://gis.stackexchange.com/questions/442323/changes-to-gdal-netcdf-driver-between-3-2-and-3-4)


Thanks

-- 
Micha Silver
Ben Gurion Univ.
Sde Boker, Remote Sensing Lab
cell: +972-523-665918

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