Sorry, I created the checkpoint I referred to with an O3 CPU with caches.
 From what I recall reading, caches don't get restored from checkpoints.
 Since the checkpoint wasn't during the benchmark run, I assumed that was
okay.

-Andrew

On Wed, May 2, 2012 at 9:07 PM, Ali Saidi <sa...@umich.edu> wrote:

> **
>
> You haven't answered the question about if you created the checkpoints
> with an atomic cpu without caches.
>
> Ali
>
>
>
>
>
> On 02.05.2012 19:58, Andrew Cebulski wrote:
>
> I have not run with the checker CPU recently.  Here's the stderr output
> from a run I did awhile back:
> http://dl.dropbox.com/u/2953302/gem5/err.0
> Note that the instruction match error is before my benchmark actually
> starts running.  The start of my boot script checks to see if my files
> image is mounted (which it is), then continues on to run the benchmark.  I
> booted the system, mounted my files image, then took a checkpoint.  I've
> been running all my tests from that checkpoint.  I found where my benchmark
> started based on the ASID (from ExecAsid debug flag).
> I delayed the start of gathering trace data until the second-to-last
> linear increase in dynamic instructions in-flight.  I'm running a new trace
> now.
> -Andrew
>
>
> On Wed, May 2, 2012 at 5:28 PM, Ali Saidi <sa...@umich.edu> wrote:
>
>>  Something is wrong well before this point. There is no reason that
>> address 0x0 or 0x4 should be translated.
>>
>> Did you happen to create a checkpoint when caches were in the system?
>>
>> Have you tried to run with the checker cpu and see if it detects any
>> errors?
>>
>>
>>
>> Ali
>>
>>
>>
>>
>>
>> On 02.05.2012 17:22, Andrew Cebulski wrote:
>>
>> They are data TLB misses that occur as the in-flight instruction count
>> rises (at 0x0 and 0x4).  The last TLB miss before the in-flight instruction
>> count finally linearly decreases is to 0x200.  Also, at the start of the
>> rising slope, I see a miss to 0x8 and 0x2508c.
>>  Here's a trace file:
>> http://dl.dropbox.com/u/2953302/gem5/tlb.out
>> To reduce size, I just have lines that have either TLB or walker in them.
>> I do see only a handful of instruction TLB misses.
>>  -Andrew
>>
>> On Wed, May 2, 2012 at 11:10 AM, Ali Saidi <sa...@umich.edu> wrote:
>>
>>>  Hi Andrew,
>>>
>>>
>>>
>>> Thanks for digging into this. I think there is an issue somewhere, but
>>> I'm still not sure where.
>>>
>>> Ali
>>>
>>> On 01.05.2012 23:34, Andrew Cebulski wrote:
>>>
>>> Okay, I'm positive now that the issue lies with delayed translations
>>> that are squashed before finishing.
>>>
>>>  On the data on instruction side? You seem to allude to data in the
>>> paragraph below, but then instructions in the latter text.
>>>
>>>  It seems to me like speculative load/stores are being executed, rather
>>> than waiting for the instructions to commit.  Once the instructions begin
>>> getting (speculatively) executed in the TLB, a reference is left there,
>>> which seems hard to root out and dereference after the instruction ends up
>>> being squashed.  At least, I have not been able to find that out in the
>>> source code as of yet.  Can anyone clarify on this?
>>>
>>>
>>>
>>>  There should only be one translation outstanding from each instruction
>>> and data side walker. Any nested transactions should be queued in the
>>> walker. Until one finishes, I'm not sure how multiple would ever be
>>> outstanding.
>>>
>>> Recall the following image that shows how the number of dynamic
>>> instruction (DynInst) objects in-flight increases linearly for varying
>>> periods of time:
>>> http://dl.dropbox.com/u/2953302/gem5/dyninst_vs_dyninstptr_dramsim2.png
>>> After enabling the TLB debug flag, I see that the linear increase in
>>> instructions in flight is proportional to the number of TLB misses.  These
>>> TLB misses have a much larger delay (resulting in translation delays) due
>>> to the fact the DramSim2 models the memory system more accurately.  It
>>> seems that with the classic memory system, TLB misses often do not have
>>> translation delays.  For whatever reason, it would also seem that every
>>> instruction that has a TLB miss also is eventually squashed...
>>>
>>>  From a data side perspective this is reasonable. While a miss is
>>> outstanding at some point instructions will stop committing and thus the
>>> instructions in flight will begin to rise until the miss is satisfied.
>>>
>>>  Here's a summary of outputs from my trace.  These two DPRINTF messages
>>> appears on the rising slopes (repeated up until the peak):
>>> TLB Miss: Starting hardware table walker for 0(656)
>>> TLB Miss: Starting hardware table walker for 0x4(656)
>>>
>>>  This is interesting/odd. I don't know a good reason why (1) a miss
>>> would be outstanding to both address 0 and address 4 at the same time. In
>>> almost all cases these pages are marked as no-access to detect segfaults.
>>> Perhaps there is an issue where the cpu is getting into a loop faulting on
>>> a bad access and then faulting again on the fault handler. I could imagine
>>> this would happen if there was some corruption in the memory system (for
>>> example the timings in dramsim exposing a bug in the cache models or
>>> something).
>>>
>>>
>>> At the peak, the following message appears (from fetch) almost every
>>> tick for (what I believe to be) every single one of the table walkers that
>>> were squashed.
>>> Fetch is waiting ITLB walk to finish!
>>>
>>>  There must be another walk in flight? The instruction side will only
>>> have one fault outstanding at once. Successive branch mispredicts will
>>> re-direct fetch but there is code that catches the fact that a different
>>> walk completed then expected and "does the right thing."
>>>
>>>  The problem is that these ITLB table walks are for instructions that
>>> were squashed as much as 0.3 billion cycles earlier, and since been removed
>>> from the CPU's instruction list.
>>>
>>>  I'm not following here.
>>>
>>>  Any help will be greatly appreciated in solving this problem.  I've
>>> hit a roadblock with getting Ruby working with ARM, most likely due to the
>>> fact that ARM has disjoint memory (x86 and Alpha do not).  There's the 256
>>> MB for physical memory, then the 64 MB for the boot loader.  I brought this
>>> up in my last email about trying to get Ruby working.  Therefore, I'm
>>> trying to get this DramSim2 integration fixed so I can start modeling FS
>>> with DRAM memory.
>>>
>>>  Brad/Steve/Nilay anyone have a suggestion on how to make this work?
>>>
>>>
>>> Note that these problems also occur in Soplex from the Spec CPU2006
>>> benchmark suite (also hits 1500 in-flight instructions assertion).  Due to
>>> time constraints, I haven't tested on other benchmarks.
>>> Thanks,
>>> Andrew
>>>    On Tue, May 1, 2012 at 4:27 AM, Andrew Cebulski <af...@drexel.edu>wrote:
>>>
>>>>  Hey Gabe,
>>>>     Thanks for this...very helpful.  I just recently got back into
>>>> debugging this problem.  I made a small change in src/base/refcnt.hh to
>>>> allow me to return the current count of references to a DynInst object.
>>>>     I then modified existing DPRINTFs to also print out reference
>>>> counts, then added some of my own when I needed extra visibility.
>>>>     I've found one memory store instruction that seems to be getting
>>>> lost.  What's happening is that is progresses as far as getting executed in
>>>> the IEW once, but a delayed translation occurs, deferring the store.  By
>>>> the time it reenters the IEW, the IQ has marked the instruction as
>>>> squashed.  Everything progresses as usual from here on out, with one
>>>> exception.  When the instruction is removed from the CPUs instruction list,
>>>> there is one reference count hanging.
>>>>     I've added in some additional debugging for my traces to help
>>>> narrow down where this reference is coming from.  As far as I can tell,
>>>> it's because of a call to initiateAcc() within the executeStore function in
>>>> the lsq unit.  Please see the following two traces.  The first trace shows
>>>> what I just discussed.  The second trace is another memory store
>>>> instruction that got squashed, however, it was squashed upon its first
>>>> entry into the IEW, therefore it never started execution.
>>>> http://dl.dropbox.com/u/2953302/gem5/lostinstruction.out
>>>> http://dl.dropbox.com/u/2953302/gem5/similarinstruction.out
>>>>     Let me know if you have any ideas based on these two instruction
>>>> traces.  I do not understand how the initiateAcc function results in
>>>> another reference, but maybe someone else does....  Since I don't see how
>>>> it makes a reference, it's hard to find out how to make sure it gets
>>>> dereferenced...
>>>>     Unfortunately, I haven't been able to add a DPRINTF in
>>>> src/base/refcnt.hh ...this would make things more clear (i.e. exactly when
>>>> references/deferences occur).  Let me know if you have any advice on
>>>> this...if it's possible.  I can't seem to get the right include files, and
>>>> likely right SConscript compile order...
>>>> Thanks,
>>>>  Andrew
>>>>
>>>>
>>>>  On Sat, Apr 7, 2012 at 9:48 PM, Gabe Black <gbl...@eecs.umich.edu>wrote:
>>>>
>>>>>  Without digging into things too deeply, it looks like you may be
>>>>> leaking references to dynamic instructions. The CPU may think it's done
>>>>> with one, but until that final reference is removed, the object will hang
>>>>> around forever. I think I've had problems before where there reference
>>>>> count ended up off by one somehow and instructions would start piling up.
>>>>> It's also possible that a clog develops in O3's pipeline and some internal
>>>>> structure stops letting instructions through and starts accumulating them.
>>>>> Either of these problems will be annoying to track down, but with enough
>>>>> digging I've been able to fix these sorts of things.
>>>>>
>>>>> This may have more to do with O3 not handling the benchmark you're
>>>>> running well rather than a problem with your new DRAM model. There may be
>>>>> some interaction between the two, though, where the new memory makes the
>>>>> timing line up to cause O3 to behave poorly. What you can do is instrument
>>>>> dynamic instruction creation and destruction and reference counting (try
>>>>> print "this" for both the reference counting wrapper and the dyn inst
>>>>> itself) and turn it on as close as you can to where things go bad tick
>>>>> wise. Then look for an instruction which gets lost, and look for where 
>>>>> it's
>>>>> reference count is incremented and decremented. It should be relatively
>>>>> easy to pair up where references are created and destroyed, and you should
>>>>> be able to identify the reference which never goes away. Then you need to
>>>>> figure out where that reference is being created. After that, you should
>>>>> have enough information to identify why the reference counting isn't being
>>>>> done correctly. It's arduous, but that's the only way.
>>>>>
>>>>> It's important to also make sure reference counts aren't decremented
>>>>> to zero prematurely. I had a problem once where that happened and the
>>>>> memory behind the object was updated by something that didn't know it was
>>>>> dead. The memory had since been reallocated to another object of the same
>>>>> type, so that other object reflected what happened to the phantom one. If 
>>>>> I
>>>>> remember that manifested as something weird like an add causing a page
>>>>> fault or something.
>>>>>
>>>>> Gabe
>>>>>
>>>>>
>>>>> On 04/07/12 18:21, Andrew Cebulski wrote:
>>>>>
>>>>>  Hi all,
>>>>> I've looked into this problem some more, and have put together a
>>>>> couple traces.  I've been becoming more familiar with how gem5 handles
>>>>> dynamic instructions, in particular how it destroys them.  I have two
>>>>> traces to compare, one with the physical memory, and the other with the
>>>>> integrated dramsim2 dram memory.  I also have two plots showing 
>>>>> instruction
>>>>> counts over time (sim ticks).  All of these are linked at the end of the
>>>>> email.
>>>>> First, I'm going to go into what I've been able to interpret regarding
>>>>> how instructions are destroyed.  In particular, comparing when DynInst's
>>>>> vs. DynInstPtr's are deconstructed/removed from the cpu.  I separate these
>>>>> because I've seen a difference, as I discuss later.  These explanations 
>>>>> are
>>>>> fairly non-existent on the wiki.  There is a section header waiting to be
>>>>> filled...
>>>>> From what I have been able to gather from the code, there is a list of
>>>>> all the instructions in flight in cpu/o3/cpu.cc called instList, with the
>>>>> type DynInstPtr.  There are three conditions to instructions being cleaned
>>>>> from this list:
>>>>> 1.)  The ROB retires its head instruction
>>>>> 2.)  Fetch receives a rob squashing signal from the commit, resulting
>>>>> in removing any instruction not in the ROB
>>>>> 3.)  Decode detects an incorrect branch prediction, resulting in
>>>>> removal of all instructions back to the bad seq num.
>>>>> Once all five stages have completed, the CPU cleans up all the removed
>>>>> in-flight instructions.  This line in particular
>>>>> in cleanUpRemovedInsts() in cpu/o3/cpu.cc deconstructs a DynInstPtr:
>>>>> instList.erase(removeList.front());
>>>>> When I turn on the debug flag O3CPU, I see the message "Removing
>>>>> instruction, ..." (from o3/cpu.cc) with the threadNum, seqNum and pcState
>>>>> after all 5 cpu stages have completed, and one of the conditions above is
>>>>> met.  I also see what tick it occurs on.
>>>>> When I turn on the DynInst debug flag, I see when instructions are
>>>>> created and destroyed (cpu/base_dyn_inst_impl.hh) and what tick.  From
>>>>> analyzing the trace files, I've gathered that this takes into account that
>>>>> instructions have different execution lengths.  So if one tick a memory
>>>>> instruction in the instList (DynInstPtr) is removed, the DynInst for that
>>>>> memory instruction will occur much later (i.e. 1M ticks later).  I have 
>>>>> yet
>>>>> to determine how this is implemented.
>>>>> Now for the problem.
>>>>> What I'm seeing when I run dramsim2 dram memory is a significant
>>>>> difference between the size of the instList vector (of DynInstPtr 
>>>>> objects),
>>>>> and the size of dynamic instruction count (of DynInst objects).  The
>>>>> benchmark I'm running is libquantum from SPEC 2006.  For the first roughly
>>>>> 130B ticks, the dynamic instruction count kept in 
>>>>> cpu/base_dyn_inst.impl.hh
>>>>> shadows the instList size in o3/cpu.cc (figure linked below) very closely.
>>>>>  Around tick 130B after libquantum started, it starts hitting what I'm
>>>>> assuming are loops (therefore branch prediction), resulting in some
>>>>> behavior that seems to imply improper instruction handling (i.e. more
>>>>> instructions in flight than allowed by ROB).
>>>>> I wasn't able to sync-up the physical and dramsim2 traces exactly by
>>>>> trace, but they should represent roughly the same area of execution.  They
>>>>> don't execute the same due to the dramsim2 modeling the memory differently
>>>>> (i.e. latency and other delays).
>>>>> I've shared both traces on my public Dropbox here --
>>>>>
>>>>> http://dl.dropbox.com/u/2953302/gem5/physical-fs-040612-ROB-Commit-DynInst-Fetch-O3CPU.out.gz
>>>>>
>>>>> http://dl.dropbox.com/u/2953302/gem5/dramsim2-fs-040612-ROB-Commit-DynInst-Fetch-O3CPU-2.out.gz
>>>>> Here are a couple plots of tick versus instruction count, with respect
>>>>> to cpu->instcount in cpu/base_dyn_inst.impl.hh and instList.size() in
>>>>> cpu/o3/cpu.cc.  --
>>>>> http://dl.dropbox.com/u/2953302/gem5/dyninst_vs_dyninstptr_physical.png
>>>>> http://dl.dropbox.com/u/2953302/gem5/dyninst_vs_dyninstptr_dramsim2.png
>>>>> Note that I added the printout of the instList size to an existing
>>>>> O3CPU DPRINTF in cleanUpRemovedInsts() in cpu/o3/cpu.cc.
>>>>> Here are the commands I ran to parse the traces into data files to
>>>>> analyze in MATLAB and create the plots:
>>>>> zgrep DynInst
>>>>> dramsim2-fs-040612-ROB-Commit-DynInst-Fetch-O3CPU-2.out.gz | grep 
>>>>> destroyed
>>>>> | awk '{print $1,$11}' > cpuinstcount.out
>>>>> zgrep instList
>>>>> dramsim2-fs-040612-ROB-Commit-DynInst-Fetch-O3CPU-2.out.gz | awk '{print
>>>>> $1,$11}' > instlistsize.out
>>>>> It seems to me like the problem might lie in gem5, but has just been
>>>>> exposed by integrating this more detailed memory model, dramsim2, into
>>>>> gem5.  Either that, or their are some timing errors in how dramsim2 was
>>>>> integrated.  I doubt this, however, since those first 190B ticks executed
>>>>> used the dramsim2 memory.  I believe the problem is a combination of 
>>>>> memory
>>>>> instructions + complex loops (branch prediction), resulting in improper
>>>>> destroying of instructions.
>>>>> I've included the ROB, Commit, Fetch, DynInst and O3CPU debug flags.
>>>>>  Their are 192 ROB entries, which is why the instList size generally has a
>>>>> max of about 192 instructions.  The dynamic instruction counts (seen in 
>>>>> the
>>>>> dramsim2 plot) seem to also imply that instructions are incorrectly been
>>>>> removed from the ROB, and then from the cpu's instruction list in cpu.cc,
>>>>> which allows more and more instructions to be added to the system 
>>>>> (possibly
>>>>> from a bad branch).
>>>>> I appreciate any help in debugging this and further figuring out the
>>>>> root problem, just let me know if you need anything else from me.  I don't
>>>>> have much more time at the moment to debug, but I can take any advice for
>>>>> quick changes and/or additional traces, then send the results back to the
>>>>> list for discussion.
>>>>> Thanks,
>>>>> Andrew
>>>>> P.S. Paul - I did try decreasing the size of the dramsim2 transaction
>>>>> (and even command) queue from 512 to 32.  The same instructions problem
>>>>> occurred.  It basically just decreased the execution time.
>>>>>
>>>>> On Wed, Mar 14, 2012 at 2:10 PM, Ali Saidi <sa...@umich.edu> wrote:
>>>>>
>>>>>>  The error is that there are more that 1500 instructions currently
>>>>>> in flight in the system. It could mean several things:
>>>>>>
>>>>>> 1. The value is somewhat arbitrarily defined and maybe there are more
>>>>>> than 1500 in your system at one time?
>>>>>>
>>>>>> 2. Instructions aren't being destroyed correctly
>>>>>>
>>>>>> You could try to to run a debug binary so you'll get a list of
>>>>>> instructions when it happens or increase the number which may
>>>>>> be appropriate for certain situations (but 1500 is quite a few inflight
>>>>>> instructions).
>>>>>>
>>>>>> Ali
>>>>>>
>>>>>> On 13.03.2012 10:56, Andrew Cebulski wrote:
>>>>>>
>>>>>>  Hi Xiangyu,
>>>>>>     I just started looking into this some more.  So at first I
>>>>>> thought it was due to updating to a more recent revision, but then I went
>>>>>> back to revision 8643, added your patch, built and ran....and now get the
>>>>>> error with it too (when running ARM_FS/gem5.opt).  I"m testing now to see
>>>>>> if an update to SWIG might have resulted in this error, maybe someone on
>>>>>> the mailing list would know if that's possible.  The difference is 1.3.40
>>>>>> vs. 2.0.3, both of which are supported according to the dependencies wiki
>>>>>> page.
>>>>>> Just for completeness, here's the error from revision 8643:
>>>>>>  build/ARM_FS/cpu/base_dyn_inst_impl.hh:149: void
>>>>>> BaseDynInst::initVars() [with Impl = O3CPUImpl]: Assertion 
>>>>>> `cpu->instcount
>>>>>>    I have not tried running with gem5.debug, so I will be doing that
>>>>>> today.  Maybe this is an assertion that is occurring due to an
>>>>>> optimization.  That would mean it wouldn't be triggered in gem5.debug 
>>>>>> since
>>>>>> it runs without optimizations.  Have you tested all debug, opt and fast
>>>>>> with your tests?
>>>>>> Thanks,
>>>>>>  Andrew
>>>>>>
>>>>>>  On Tue, Mar 13, 2012 at 1:37 PM, Rio Xiangyu Dong <
>>>>>> riosher...@gmail.com> wrote:
>>>>>>
>>>>>>>   Hi Andrew,
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> I didn’t see this error in my simulations. May I ask which gem5
>>>>>>> version you are using? I find some of the latest code updates do not 
>>>>>>> comply
>>>>>>> with my changes. I am still using the DRAMsim2 patch on Gem5 repo8643, 
>>>>>>> and
>>>>>>> have run all the runnable benchmarks in SPEC2006, SPEC2000, EEMBC2, and
>>>>>>> PARSEC2 on ARM_SE.
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> Thank you!
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> Best,
>>>>>>>
>>>>>>> Xiangyu
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> *From:* Andrew Cebulski [mailto:af...@drexel.edu]
>>>>>>> *Sent:* Thursday, March 08, 2012 6:52 PM
>>>>>>>
>>>>>>> *To:* gem5 users mailing list
>>>>>>> *Cc:*riosher...@gmail.com; sa...@umich.edu
>>>>>>>
>>>>>>> *Subject:* Re: [gem5-users] A Patch for DRAMsim2 Integration
>>>>>>>
>>>>>>> Xiangyu,
>>>>>>>
>>>>>>>    I've been having an issue recently with the number of
>>>>>>> instructions I've been seeing committed to the CPU (I have a separate
>>>>>>> thread on this).  It turns out the issue seems to be coming from this 
>>>>>>> patch
>>>>>>> you created to integrate DramSim2 with Gem5.  Unfortunately, I've been
>>>>>>> running with gem5.fast, not gem5.opt.  So up until now, I haven't been
>>>>>>> seeing assertions.  I thought I'd run it with gem5.opt or debug back in
>>>>>>> December, but I must not have.  My runs on the Arm O3 cpu fails with 
>>>>>>> this
>>>>>>> assertion:
>>>>>>>
>>>>>>> build/ARM/cpu/base_dyn_inst_impl.hh:149: void
>>>>>>> BaseDynInst::initVars() [with Impl = O3CPUImpl]: Assertion 
>>>>>>> `cpu->instcount
>>>>>>>
>>>>>>> -Andrew
>>>>>>>
>>>>>>> Date: Sun, 18 Dec 2011 01:48:58 -0800
>>>>>>> From: "Dong, Xiangyu" <riosher...@gmail.com>
>>>>>>> To: "gem5 users mailing list" <gem5-users@gem5.org>
>>>>>>> Subject: [gem5-users] A Patch for DRAMsim2 Integration
>>>>>>> Message-ID: gmail.com>
>>>>>>>
>>>>>>> Content-Type: text/plain; charset="us-ascii"
>>>>>>>
>>>>>>> Hi all,
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> I have a Gem5+DRAMsim2 patch.  I've tested it under both SE and FS
>>>>>>> modes.
>>>>>>> I'm willing to share it here.
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> For those who have such needs, please go to my website
>>>>>>> www.cse.psu.edu/~xydong <http://www.cse.psu.edu/%7Exydong> to
>>>>>>> download the patch and test it.  To enable
>>>>>>> DRAMSim2, use se_dramsim2.py script instead of se.py (for FS, you
>>>>>>> can create
>>>>>>> by yourself).  The basic idea to enable the DRAMsim2 module is to
>>>>>>> use the
>>>>>>> derived DRAMMemory class instead of PhysicalMemory class.
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> Please let me know if there are bugs.
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> Thank you!
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> Best,
>>>>>>>
>>>>>>> Xiangyu Dong
>>>>>>>
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