I'm using Eclipse 2.1.1, in case that is relevant here. The top-level dir (docs) is in .cvsignore, so that is not flagged as being out of synch, but all the subdirectories and files are compared, and the result is that all the contents are shown as being new files.
This is a clear misbehaviour of Eclipse.
You should try the workaround: - exit Eclipse - manually remove CVS information from all directories under docs/: cd docs && rm -rf `find -type d -name CVS` - startup Eclipse - refresh - exit Eclipse - startup Eclipse - synchronize
HTH
Odi
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