I'm not the admin either, but, this is why the bigBed format was created: http://genome.ucsc.edu/goldenPath/help/bigBed.html
I use it for anything over 50MB... Otherwise you waste too much time waiting for things to load. Ariel -----Original Message----- From: [email protected] [mailto:[email protected]] On Behalf Of Steve Lianoglou Sent: Monday, August 24, 2009 12:04 PM To: [email protected] Cc: [email protected] Subject: Re: [Genome] trouble loading larger BED files Hi, I'm not the admin, but: On Aug 24, 2009, at 1:10 AM, [email protected] wrote: > Dear Genome browser adminisistrator, > > We are having problems using the Human Genome browser in two areas: > A) BED files over 100MB don't seem to upload to custom tracks and we > get a white screen. Splitting your BED files by chromosome is probably necessary with large datasets: https://lists.soe.ucsc.edu/pipermail/genome/2007-April/013324.html Also, are you gzipping your bed files? Perhaps that might help as well. HTH, -steve -- Steve Lianoglou Graduate Student: Computational Systems Biology | Memorial Sloan-Kettering Cancer Center | Weill Medical College of Cornell University Contact Info: http://cbio.mskcc.org/~lianos/contact _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
