Hello, We agree with the advice given by the other users. Create smaller files, consider using bigBED, or perhaps both.
One addition to include is the suggestion to use the Sessions feature to help manage the data tracks (they stay on the server longer if in a Session). But remember to keep local copies! http://genome.ucsc.edu/goldenPath/help/hgTracksHelp.html#Sessions Good luck and let us know if you continue to have problems after trying out some of these work arounds. Even at UCSC, locally, we break files up into smaller chunks for upload (and other reasons, display speed, etc). We are assuming that you are using the public browser. If you are using a local install, then it might be worth talking to your local system admin to see if there are any connection issues/time-outs, just to eliminate that as an issue. Even locally, the file will need to be made into smaller sub-files if bigBed does not work. Thanks, Jennifer ------------------------------------------------ Jennifer Jackson UCSC Genome Bioinformatics Group ----- [email protected] wrote: > From: [email protected] > To: [email protected] > Sent: Sunday, August 23, 2009 10:10:47 PM GMT -08:00 US/Canada Pacific > Subject: [Genome] trouble loading larger BED files > > Dear Genome browser adminisistrator, > > We are having problems using the Human Genome browser in two areas: > A) BED files over 100MB don't seem to upload to custom tracks and we > get a white > screen. > B)The genome browser is very slow and often displays the white page > after trying to > display for a few minutes. > If you know how to solve these problems please let us know. > > Best, > > Aurel Betz > Rockefeller University > > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
