Hi
I am JaeBum Bae in Yonsei University, Seoul, Korea.
Thank you for your great efforts on maintaining such a nice and
comprehensive database in public.
I have questions on genome browser database system hg18 assembly
(March 2006 Assembly Mammal Human)
I tried to access to repeat database ( Simplerepeat.txt) and CpG database
(CpgIslandExt.txt), and downloaded form your web site.
First, can you show what is the head line for Simplerepeat.txt
for example in this file , it starts like this with no header
information. I would like to know what is exact meaning on each column.
585
chr1
0
468
trf
6
77.2
6
95
3
789
33
51
0
15
1.43
TAACCC
585
chr1
620
860
trf
76
3.2
76
95
2
434
17
30
45
6
1.73
GGCGCAGGCGCAGAGAGGCGCGCCGCGCCGGCGCAGGCGCAGAGACACATGCTAGCGCGTCCAGGGGTGGAGGCGT
amd also could you show me how to access SINE, LINE database each...
Second, In cpgIslandsExt.txt, I can find only CpG Island location at the
promoter region, but in your browser, CpG islands is also appearing on genic
(genebody) region. So I would like to know whether these information is also
available in your database as a downloadable format.
Thank you for your generous help in advance
JaeBum Bae
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