Hello, Is it possible that you are comparing different versions of genomic sequence?
1) The Ensembl browser is displaying Human [GRCh37], what UCSC names as Feb. 2009 (hg19) 2) The UCSC Mar. 2006 (hg18) browser is the default at our web site The hg19 browser is still undergoing track development, so it does not contain all of the tracks that hg18 does. You are welcome to use our test server to see what tracks are currently in process for hg19 (such as UCSC Genes), but please keep in mind that data on the test server may change before final release. http://genome-test.cse.ucsc.edu/ Examine the browsers and please let us know if this does not resolve the discrepancies. Thanks, Jennifer ------------------------------------------------ Jennifer Jackson UCSC Genome Bioinformatics Group ----- "Yong Gon Cho" <[email protected]> wrote: > From: "Yong Gon Cho" <[email protected]> > To: "[email protected]" <[email protected]> > Sent: Friday, October 23, 2009 12:46:11 PM GMT -08:00 US/Canada Pacific > Subject: [Genome] gene location > > Hi, I am wondering if I have an accurate information about gene > location. > At recent, I have searched genes of human (ALK, KIF5B) using Ensembl > genome browser and UCSC genome browser both. > But, there was dicrepancy in location numbers of the gene. > For instance, ALK gene starts 29,415,640 bps and ends 30,144,432 bps > in Ensembl, but is from 29,269,144 bps to 29,997,936 bps in USCS. > What's happening? There is a difference of 146 kb between 2 db > systems. Can you let me know why? Thanks, Yonggon Cho > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
