Hello, Sometimes this information is noted on an assembly's gateway page and sometimes it is not. For mouse, it appears to not be. Instead, link over to the source for information http://www.ncbi.nlm.nih.gov/mapview/stats/BuildStats.cgi?taxid=10090&build=37&ver=1
If you do not find the information you need, perhaps contact them and ask for the data. For some reason, the annotation for these regions is sometimes tricky to obtain, but it is possible. Also, I will forward the request to have this added to the mouse gateway page to the project scientists. But, do not wait for us to add it in, this request will be prioritized along with our other tasks and I cannot commit about if/when it would appear. Thanks, Jennifer ------------------------------------------------ Jennifer Jackson UCSC Genome Bioinformatics Group ----- "Na Liu" <[email protected]> wrote: > From: "Na Liu" <[email protected]> > To: [email protected] > Sent: Friday, November 13, 2009 1:21:42 PM GMT -08:00 US/Canada Pacific > Subject: [Genome] annotation of euchromatin, centromere, heterochromatin, > telomere coordinates in UCSC > > Hi, > > How can I know where the centromere, telomere, euchromatin, > heterochromatin > regions' coordinates in UCSC? Especially for mouse. > > Note: I've tried the method that UCSC experts recommended as follows, > but > it doesn't work, by which I can not find telomere region's > coordinates, and > I found the region in the list, marked as centromere is from position > 1 to > position 3000, which I don't think it is true because the centromere > region > should be in the middle of a chromosome, not in the beginning of a > chromosome!!! > > > Thanks > Sophia > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
