Good Morning Alex: The chromosome coordinates in wigFix format are 1-relative.
See also: http://genome.ucsc.edu/goldenPath/help/wiggle.html Data statistics of the Hg19 46-way phyloP tracks: http://genomewiki.ucsc.edu/index.php/Hg19_phyloP_histograms Tree structure correction: http://genomewiki.ucsc.edu/index.php/Human/hg19/GRCh37_46-way_multiple_alignment --Hiram Alex Reynolds wrote: > I am curious if the phyloP44 conservation scores reported here: > > http://hgdownload.cse.ucsc.edu/goldenPath/hg18/phyloP44way/ > > for vertebrate, primates and placental mammals are 0- or 1-based? > > They are in compressed, fixed-width wig-format, which leads me to believe > they are 1-based, but I am not certain. > > If anyone knows for sure, I would appreciate any confirmation or disagreement. > > Thanks, > Alex _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
