Hello, This is the expected result. Examine this section of our FAQ can help explain: http://genome.ucsc.edu/FAQ/FAQtracks#tracks1
Hope this helps, Jennifer ------------------------------------------------ Jennifer Jackson UCSC Genome Bioinformatics Group ----- "Sevinc Ercan" <[email protected]> wrote: > From: "Sevinc Ercan" <[email protected]> > To: [email protected] > Sent: Tuesday, January 5, 2010 8:28:27 AM GMT -08:00 US/Canada Pacific > Subject: [Genome] 1 bp difference in start coordinates of genes in downloaded > table and UCSC browser for ce4 > > Hello, > > While making a list of ce4 Wormbase genes, I noticed that the trx > start > coordinates downloaded from tables (gene and Gene prediction tracks, > Wormbase genes, SangerGene) is 1 bp less than that shown in the UCSC > browser and WS170 Wormbase. > Could you clarify this difference? Does this difference also in the > CDS > start sites? > Thank you, > > Sevinc Ercan > > For example: > Table for gene Y74C9A.3.1: > #name chrom strand txStart txEnd cdsStart cdsEnd > > exonCount exonStarts exonEnds proteinID > Y74C9A.3.1 chrI - *4131 * 10232 4220 10148 5 > 4131,5194,6036,9726,10094, 4358,5296,6327,9846,10232, Q9N4D9 > > If you type the gene in the browser and get info: > Genomic Sequence (chrI:*4,132*-10,232) > > Y74C9A.3 gene info downloaded from Wormbase WS170 wormmart: > Gene WB ID Gene Public Name Chr Name Strand Start > > (bp) End (bp) > WBGene00022277 Y74C9A.3 I -1 *4132* 10232 > > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
