Hello, While making a list of ce4 Wormbase genes, I noticed that the trx start coordinates downloaded from tables (gene and Gene prediction tracks, Wormbase genes, SangerGene) is 1 bp less than that shown in the UCSC browser and WS170 Wormbase. Could you clarify this difference? Does this difference also in the CDS start sites? Thank you,
Sevinc Ercan For example: Table for gene Y74C9A.3.1: #name chrom strand txStart txEnd cdsStart cdsEnd exonCount exonStarts exonEnds proteinID Y74C9A.3.1 chrI - *4131 * 10232 4220 10148 5 4131,5194,6036,9726,10094, 4358,5296,6327,9846,10232, Q9N4D9 If you type the gene in the browser and get info: Genomic Sequence (chrI:*4,132*-10,232) Y74C9A.3 gene info downloaded from Wormbase WS170 wormmart: Gene WB ID Gene Public Name Chr Name Strand Start (bp) End (bp) WBGene00022277 Y74C9A.3 I -1 *4132* 10232 _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
