Dear Sir or Madam, I am working on the conservation between mouse genome and other mammalian genomes. I wonder how I can extract corresponding target genome sequences given mouse coordination as a query. For example, the 30-way multiz alignment track in genome browser shows 'C' is at chr4:139,328,937 in mouse genome and the corresponding base in rat genome is 'T' and in human genome is 'G'. I have scores of thousands of such queries need to make. Is there a way (or script/code) to do this in a high-throughput way?
Thanks, Marc _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
