Hi, I'm trying to liftover the coordinates for several genomic locations on the Rhesus genome over to Human genome. The most simplest I have learned is to use BED format to provide chr, start, and end location. It is working and I have no problem mapping Rhesus coordinates correctly to Human. The question I have though, is there a way that I can get strand orientation on the Human genome without going through BLAT?
The liftOver can have orientation information if I use psl formatted BLAT output file as input. I want to skip BLAT since we have reads that can be between 15-20 bp long. Thank you for any suggestion. perdeep ________________________________ Email Disclaimer: www.stjude.org/emaildisclaimer _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
