Hello, I have a bedGraph file,
chr1 4770 4770 1.47749 chr1 4771 4771 2.95498 chr1 4772 4772 2.95498 chr1 4773 4773 2.95498 chr1 4774 4774 2.95498 chr1 4775 4775 2.95498 chr1 4776 4776 2.95498 chr1 4777 4777 5.90996 chr1 4778 4778 4.43247 chr1 4779 4779 4.43247 chrY 57412520 57412520 1.47749 chrY 57412521 57412521 1.47749 chrY 57412522 57412522 1.47749 chrY 57412523 57412523 1.47749 chrY 57412524 57412524 1.47749 chrY 57412525 57412525 1.47749 chrY 57412526 57412526 1.47749 chrY 57412527 57412527 1.47749 chrY 57412528 57412528 1.47749 etc, etc. it displays just fine when I upload to the UCSC genome Browser. I have tried to convert it into a bigWig file using the bedGraphtoBigWig command. The command executes without error, ~/bin/ucsc/bedGraphToBigWig antisense.sorted ~/bin/ucsc/hg18.chrom.sizes antisense.bw When I upload the bigBed file via, track type=bigWig name="seqc_454_brain_antisense" description="anti-sense seqc 454 brain alignments (bwa)" bigDataUrl=http://physiology.med.cornell.edu/faculty/mason/lab/seqc/seqc_454_brain_antisense.bw the track loads, but it constantly displayed "no_data", but there should certainly be valid data in there, provided that the bedGraph qua bedGraph loads just fine! Any advice? Thanks a lot, -Paul -- Paul Zumbo Staff Associate Laboratory of Christopher E. Mason, Ph.D. Department of Physiology & Biophysics Weill Cornell Medical College _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
