Is there a problem with the current Kent source tree bedToBigBed?
I downloaded jksrc.zip tonight to 64-bit Red Hat Enterprise Linux 4.x. I'd been
using wigToBigWig for some time on that machine, but wanted to ensure that I
was using the latest version. I recompiled it after cd'ing to the
src/utils/wigToBigWig folder -
{xhost06}~/linux_x86_64/KentSourceTree/kent/src/utils/wigToBigWig> make
gcc -O -g -Wall -Werror -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o
/home/grobertson/bin/x86_64/wigToBigWig wigToBigWig.o ../../lib/x86_64/jkweb.a
-lm -lz
{xhost06}~/linux_x86_64/KentSourceTree/kent/src/utils/wigToBigWig> wigToBigWig
wigToBigWig v 3 - Convert ascii format wig file (in fixedStep, variableStep
or bedGraph format) to binary big wig format.
...
I want to start to use bedToBigBed. When I ran make from the src/utils folder,
a number of folders were processed (aNotB, addCols, ave, aveCols, bedClip,
bedGraphToBigWig) but there was an error message for bedToBigBed -
make[1]: Entering directory
`/home/grobertson/linux_x86_64/KentSourceTree/kent/src/utils/bedToBigBed'
gcc -O -g -Wall -Werror -Wformat -Wimplicit -Wreturn-type -Wuninitialized
-D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64
-Wall -Werror -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc
-I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o
bedToBigBed.o -c bedToBigBed.c
bedToBigBed.c: In function `bbFileCreate':
bedToBigBed.c:537: warning: long long unsigned int format, long unsigned int
arg (arg 4)
make[1]: *** [bedToBigBed.o] Error 1
make[1]: Leaving directory
`/home/grobertson/linux_x86_64/KentSourceTree/kent/src/utils/bedToBigBed'
make: *** [all] Error 2
If I'm missing something simple I apologize for wasting the list's time.
Thanks for your help with this.
Gordon
--
Gordon Robertson
BC Cancer Agency Genome Sciences Centre
Vancouver BC Canada
_______________________________________________
Genome maillist - [email protected]
https://lists.soe.ucsc.edu/mailman/listinfo/genome
