Hi, Gordon!
Looks like you are using gcc 3.4
and we are using gcc 4.1.2 on 64-bit linux.
Either the gcc3.4 is more sensitive
and gcc4 has a bug in not showing the
warning; or, perhaps the gcc developers
decided that this shouldn't be a warning after all.
In any case, simply adding parentheses around the
argument made both compilers happy.
bits64 is definted as unsigned long long.
In effect we had this:
printf("%llu", (bits64)X*Y);
and both versions of gcc are happy when we changed it to
printf("%llu", (bits64)(X*Y));
This change has been commmitted.
You can either update this file from CVS
or else you can just add the parentheses yourself.
-Galt
Gordon Robertson wrote:
> Is there a problem with the current Kent source tree bedToBigBed?
>
> I downloaded jksrc.zip tonight to 64-bit Red Hat Enterprise Linux 4.x. I'd
> been using wigToBigWig for some time on that machine, but wanted to ensure
> that I was using the latest version. I recompiled it after cd'ing to the
> src/utils/wigToBigWig folder -
> {xhost06}~/linux_x86_64/KentSourceTree/kent/src/utils/wigToBigWig> make
> gcc -O -g -Wall -Werror -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o
> /home/grobertson/bin/x86_64/wigToBigWig wigToBigWig.o
> ../../lib/x86_64/jkweb.a -lm -lz
> {xhost06}~/linux_x86_64/KentSourceTree/kent/src/utils/wigToBigWig> wigToBigWig
> wigToBigWig v 3 - Convert ascii format wig file (in fixedStep, variableStep
> or bedGraph format) to binary big wig format.
> ...
>
> I want to start to use bedToBigBed. When I ran make from the src/utils
> folder, a number of folders were processed (aNotB, addCols, ave, aveCols,
> bedClip, bedGraphToBigWig) but there was an error message for bedToBigBed -
>
> make[1]: Entering directory
> `/home/grobertson/linux_x86_64/KentSourceTree/kent/src/utils/bedToBigBed'
> gcc -O -g -Wall -Werror -Wformat -Wimplicit -Wreturn-type -Wuninitialized
> -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64
> -Wall -Werror -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc
> -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o
> bedToBigBed.o -c bedToBigBed.c
> bedToBigBed.c: In function `bbFileCreate':
> bedToBigBed.c:537: warning: long long unsigned int format, long unsigned int
> arg (arg 4)
> make[1]: *** [bedToBigBed.o] Error 1
> make[1]: Leaving directory
> `/home/grobertson/linux_x86_64/KentSourceTree/kent/src/utils/bedToBigBed'
> make: *** [all] Error 2
>
> If I'm missing something simple I apologize for wasting the list's time.
>
> Thanks for your help with this.
>
> Gordon
> --
> Gordon Robertson
> BC Cancer Agency Genome Sciences Centre
> Vancouver BC Canada
>
>
>
>
> _______________________________________________
> Genome maillist - [email protected]
> https://lists.soe.ucsc.edu/mailman/listinfo/genome
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