On Feb 3, 2010, at 5:31 PM, Brooke Rhead wrote: > This may take a little longer than we first estimated. We need to wait until > the assembly is officially accessioned in GenBank before we build a browser > for it (and it's not there yet).
Thanks much for the update Brooke. I've built up an assembly from the reads at the Broad (using agpToFa and their Chromosomes.agp), run repeatmasker and trf (<=12) on the assembly, and soft-masked everything with the output from both. This was after ensuring the agpToFa gave me correct results when following the same pattern for the anoCar1 data at the Broad. For now, I'm probably just going to blat back to that for what we need to do. Hopefully, we can double-check our results when the over.chain is available! thanks again! -b < * ) (_ \\ _ || _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
