Hello, We suggest using BAM format and either loading as custom track or as a regular track into your mirror.
http://genome.ucsc.edu/goldenPath/help/bam.html Jennifer --------------------------------- Jennifer Jackson UCSC Genome Bioinformatics Group http://genome.ucsc.edu/ On 2/22/10 1:24 PM, Alper Kucukural wrote: > Hi, > I made a mirror in our servers and started uploading our hits onto our > genome browser mirror with wiggle and bed format using hgLoadWiggle and > hgLoadBed. I have one mutated location in the tags and would like to see > them in the genome browser. I am searching unique hits by allowing one > mismatch with bowtie. So, I know the exact position of these > errors/mutations on the hit tags. > > In blat results, I can see the mismatch location. > Is it possible to write the base or at least change the color of the > mismatches on the tags with any formats? > Thanks, > > Alper Kucukural, Ph.D. > Moore Lab > Biochemistry and Molecular Pharmacology Dept. > Lazare Medical Research Building, 870P > UMass Medical School > 364 Plantation St. > Worcester, MA 01605-4321 > Lab: 508-856-2838 > Cell: 785-393-8228 > > > > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
