At UCSC Genome Browser:
clade: Mammal, genome: Human, assembly: Mar. 2006, group: Regulation, track: TFBS Conserved, table: tfbsConsSites and tfbsConsFactors. Finally paste list like V$AML1_01 V$AP-1_01 V$BCR_01 V$BMP2_01 V$BMP6_01 V$BRCA1_01 V$C/EBPa_01 V$CCND1_01 V$c-myb_01 V$CREB_01 V$E2F_01 V$E6_01 V$EGR1_01 V$EIF2C2_01 V$Eralpha_01 V$FOXP3_01 V$FSH_01 V$GATA1_01 V$HIF1A_01 V$HMGA1_01 V$HNF1A_01 V$HoxD10_01 V$IL1B_01 V$LMO2_01 V$LPS_01 V$MECP2_01 V$MEF2_01 V$MRF4_01 V$MRF5_01 V$MYC_01 V$MYCN_01 V$MYF5_01 V$MyoD_01 V$Myogenin_01 V$NFIB_01 V$NFKB1_01 V$NKX2-5_01 V$NR3B3_01 V$PDGF_01 V$PLZF_01 V$PRKCA_01 V$PTEN_01 V$REST_01 V$Rex1_01 V$RUNX1_01 V$SHP_01 V$SIP1_01 V$SMAD4_01 V$SOX2_01 V$SP1_01 V$TGFB1_01 V$Thrombin_01 V$TLR2_01 V$TLR4_01 V$TLR7_01 V$TLR8_01 V$TLX_01 V$TLX1_01 V$TLX3_01 V$TNF-alpha_01 V$TP53_01 V$TRIM32_01 V$TWIST1_01 V$VHL_01 V$YY1_01 V$ZEB1_01 V$ZEB2_01 But i get information only about 9 TFs using version 01. Similarly using version 02 I get 5 TFs, version 03-> 3 TFs, version 04-> 2 TFs, version 05-> 1 TFs, version 06-> 1TFs. Total I get 21 TFs . Among which # unique TFs= 9. How can i get info about rest 58 TFs. Pls. help me. This mail is scanned by Ironport _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
