Dear users,
I have a problem with MAF format.
>From table browser (group:COMPARATIVE GENOMICS track:Conservation
table:MultizAlign), I generated a MAF file in output.
These are the first lines of the file:
##maf version=1
a score=353.000000
s hg18.chr7 151149711 1 + 158821424 A
s panTro2.chr7 152377533 1 + 160261443 G
q panTro2.chr7 9
But when I add this custom tracks in UCSC genome browser, the error is
*File 'prova_sample.maf' - Unrecognized format line 2 of custom track:
a score=353.000000 (note: chrom names are case sensitive)
*
So I can't understand what is the problem.
Someone could please help me about the MAF format?
Can I use as score phyloP conservation value?
Thank you very much!
Maria Elena
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