Hello, Are you using the Custom track submission form? If so, please note the instructions about the optional browser lines and the non-optional track lines required.
Specifically for MAF: http://genome.ucsc.edu/FAQ/FAQformat.html#format5 General help: http://genome.ucsc.edu/goldenPath/help/hgTracksHelp.html#CustomTracks Jennifer --------------------------------- Jennifer Jackson UCSC Genome Bioinformatics Group http://genome.ucsc.edu/ On 3/1/10 2:38 AM, Lella Sana wrote: > Dear users, > I have a problem with MAF format. >> From table browser (group:COMPARATIVE GENOMICS track:Conservation > table:MultizAlign), I generated a MAF file in output. > These are the first lines of the file: > > ##maf version=1 > a score=353.000000 > s hg18.chr7 151149711 1 + 158821424 A > s panTro2.chr7 152377533 1 + 160261443 G > q panTro2.chr7 9 > > But when I add this custom tracks in UCSC genome browser, the error is > > > *File 'prova_sample.maf' - Unrecognized format line 2 of custom track: > a score=353.000000 (note: chrom names are case sensitive) > * > > > So I can't understand what is the problem. > Someone could please help me about the MAF format? > Can I use as score phyloP conservation value? > > Thank you very much! > Maria Elena > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
