Hi Davide and Jen,

I have the following the following two files at 
ftp://aretha.jax.org/pub/jax-churchill/:

C3H_chr1_175335000-175400000.bam<ftp://aretha.jax.org/pub/jax-churchill/C3H_chr1_175335000-175400000.bam>

C3H_chr1_175335000-175400000.bam.bai<ftp://aretha.jax.org/pub/jax-churchill/C3H_chr1_175335000-175400000.bam.bai>

Those two files have the same permission settings. I am confused that why the 
bam file can be accessed but the .bai can't. Thanks,

Yueming

From: Davide Cittaro [mailto:[email protected]]
Sent: Monday, March 15, 2010 3:49 PM
To: Yueming Ding
Cc: [email protected]
Subject: Re: [Genome] custom BAM track


On Mar 15, 2010, at 8:05 PM, Yueming Ding wrote:

I got the following error:
Error Can't access My BAM's bigDataUrl 
ftp://aretha.jax.org/pub/jax-churchill/C3H_chr1_175335000-175400000.bam and/or 
the associated index file 
ftp://aretha.jax.org/pub/jax-churchill/C3H_chr1_175335000-175400000.bam.bai


Have you indexed the bam file?

$ samtools index C3H_chr1_175335000-175400000.bam


d
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