Hello Hersh, There are two tracks in the same track group "Repeats and Variation" to examine first:
Common Cell CNV DGV Struct Var Other tracks here may also have copy number information related to variation on different ranges/data types/populations. With the browser open, click on the button "configure" under the main graphic. Then, scroll down the track group and click on "show all". Click on track names to read the contents, methods, source, references, etc. Note that many of these track will be present in hg18 only, for now. Thanks, Jennifer --------------------------------- Jennifer Jackson UCSC Genome Informatics Group http://genome.ucsc.edu/ On 4/6/10 6:54 AM, Hersh wrote: > Hi Jennifer > Thanks for your input. I have one more question, can we also display > CNVs in UCSC tracks? > Regards > Hersh > > > On 5 April 2010 22:20, Jennifer Jackson <[email protected] > <mailto:[email protected]>> wrote: > > Hello, > > Tracks found in the Variation and Repeats track group with SNP > content would be a good place to start. For example, using SNPs(130) > [aka dbSNP build 130] the ability to choose the "class" of Simple > Nucleotide Polymorphisms includes In/Del, Insertion, and Deletion. > Locate controls on the track description page (click on the track > name or side bar in browser window when track is open). > > Thanks, > Jennifer > > --------------------------------- > Jennifer Jackson > UCSC Genome Informatics Group > http://genome.ucsc.edu/ > > > On 4/5/10 4:09 AM, Hersh wrote: > > Dear All > > We would like to see indels in human hg18 assembly. Can anyone > please help > up in displaying it? > > Thanks > Hersh > _______________________________________________ > Genome maillist - [email protected] > <mailto:[email protected]> > https://lists.soe.ucsc.edu/mailman/listinfo/genome > > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
