Good Morning Wuqi: Please start with the document:
http://hgwdev.cse.ucsc.edu/~kent/src/unzipped/product/README.trackDb which will lead you to may other interesting documents on how to create tracks in the genome browser. To see the definition of the track types in this Open Chromatin, look into the file: http://hgwdev.cse.ucsc.edu/~kent/src/unzipped/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra > track wgEncodeChromatinMap > compositeTrack on > shortLabel Open Chromatin > longLabel ENCODE Open Chromatin, Duke/UNC/UT > group regulation > subGroup1 view Views Peaks=Peaks PkZ=Peaks_(Zinba) SIG=Signal_(F-Seq_Density) > SIGBO=Signal_(Base_Overlap) > ... etc ... --Hiram WANG Wuqi wrote: > Hi Hiram, > > Good Morning ! > > Could you have such guide to create similar track, like 'Open Chromatin' in > hg18? > > Please give advice > > > Thanks & Regards > > Wuqi > > -----Original Message----- > From: WANG Wuqi > Sent: Tuesday, March 30, 2010 10:06 AM > To: 'Hiram Clawson' > Cc: [email protected]; WANG Wuqi > Subject: RE: How to create similar track 'Open Chromatin' of hg18 > > Hi Hiram, > > Good Morning ! > > I already read that page, but I do not know how to create similar track yet. > MY question is what data format, what track entry in trackDb.ra, how to create > such web page for such track. > > Could you provide detail procedure for similar track creation ? > > Please give advice > > Thanks & Regards > > Wuqi > > > -----Original Message----- > From: Hiram Clawson [mailto:[email protected]] > Sent: Thursday, March 25, 2010 12:05 AM > To: WANG Wuqi > Cc: [email protected] > Subject: Re: How to create similar track 'Open Chromatin' of hg18 > > Good Morning Wuqi: > > Please read the description page for this track: > > http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg18&g=wgEncodeChromatinMap > > The experimental and computational procedures that created > this track are described in the "Methods" section here and in the > references that this page points to. > > --Hiram > > WANG Wuqi wrote: >> Hi Hiram, >> >> Good morning ! >> >> For the track 'Open Chromatin' of the group 'Regulation' in hg18, >> Can we create similar tracks? If yes, how to create it? >> >> Please give advice >> >> >> Thanks & Regards >> >> Wuqi >> >> >> > > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
