Hello Wang, The danRer6 assembly is comprised of both chromosomes and scaffolds. Go to the gateway page for the assembly, review the credits, and click on the link to "Sequences" to view the complete list of component reference genome sequence.
Hopefully this helps to clear up the data content, Jennifer --------------------------------- Jennifer Jackson UCSC Genome Informatics Group http://genome.ucsc.edu/ On 4/26/10 2:11 AM, wang haifang wrote: > Dear support team, > I downloaded pairwise alignment between zebrafish and other fish from > goldenPath/danRer6/(*.net.axt.gz), and I found that all the alignment > were mapped on the zebrafish contigs not chromosome. Since we already > have the chromosome assembly, why not mapped the other genomes to the > zebrafish chromosome and how can I get the alignment to the zebrafish > chromosome? > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
