Hello, I am unable to duplicate a problem using sequence type = genome at the main UCSC browser at http://genome.ucsc.edu.
Are you by chance selecting output for sequence type = mRNA? If so, there is no intron sequence to output. For this query, use sequence type = genome. Hopefully this help, but if not, please let us know, Jennifer --------------------------------- Jennifer Jackson UCSC Genome Informatics Group http://genome.ucsc.edu/ On 4/29/10 2:29 AM, H Joshi wrote: > > Hi, > I have about 503 UCSC knownGene canonical transcripts with their exon > coordinates defined on hg19 genome assembly, but their exon and intron > sequences (one fasta record per gene) could not be retrieved using table > browser - knownGene track and output format of sequence. I could not > understand what goes wrong here. > Here are the few of the 503 ucsc ids: > uc001abr.1 > uc001abt.3 > uc001axj.2 > uc001azf.2 > uc001bfm.3 > uc001bhi.3 > uc001bqo.2 > uc001buv.3 > uc001cdk.2 > uc001cqo.1 > uc001crl.2 > uc001dil.1 > uc001dno.2 > uc001eda.1 > uc001egj.3 > uc001ela.3 > uc001elf.3 > uc001eql.2 > uc001fbj.2 > uc001fvw.2 > > > Thanks, > H > > > _________________________________________________________________ > Hotmail: Trusted email with powerful SPAM protection. > https://signup.live.com/signup.aspx?id=60969 > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
