I just realized that this is an option. But would this waste the memory as each process has to load its own genome?
On Tue, Jun 15, 2010 at 11:28 AM, Hiram Clawson <[email protected]> wrote: > It isn't necessary to run parallel blat. Simply run thousands > of copies of it at the same time on different parts of your > target and query sequences. > > --Hiram > > ----- Original Message ----- > From: "Peng Yu" <[email protected]> > To: [email protected] > Sent: Monday, June 14, 2010 8:21:32 PM GMT -08:00 Tijuana / Baja California > Subject: [Genome] parallel blat > > A simple google search and the search in the output of blat command > help do not show up any information on if blat can be run using > multiple CPUs. If it support multi-threading or parallelism, would you > please let me know what option I should use? > > -- > Regards, > Peng > -- Regards, Peng _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
