Peng, On Tuesday 15 June 2010 05:15:54 pm Peng Yu wrote: > I just realized that this is an option. But would this waste the > memory as each process has to load its own genome?
You can set up Blat server for this, see Blat documentation for details. Server loads and indexes a sequence in memory that can be used for searching by Blast clients over the network. There are some limitations and tradeoffs with this configuration so you will need to benchmark your code to find out if it will provide enough benefits in your specific case. Best, Ivan The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
