This document was confusing to me. I thought it is "-bed12" normally
only use first three fields. I now realize that it actually mean
without '-bed12" it only use the first three fields. I'm not sure who
the maintainer of this command is, would you please help make the
document clearer.
-bed12 expect bed12 and count based on blocks
normally only first three fields are used.
On Tue, Jun 15, 2010 at 7:59 PM, Brian Raney <[email protected]> wrote:
> Hey Peng,
> bedItemOverlapCount now has a bed12 option that won't count the empty spaces
> between the blocks.
> brian
>
> On Tue, Jun 15, 2010 at 5:54 PM, Peng Yu <[email protected]> wrote:
>>
>> I'm using the method on the following URL to convert bed to wig. But
>> the problem is that if blockCount is greater than 1, the breaks in
>> between blocks is also counted by bedItemOverlapCount. Is there a
>> different program to avoid the breaks?
>>
>> https://lists.soe.ucsc.edu/pipermail/genome/2008-September/017062.html
>>
>> --
>> Regards,
>> Peng
>> _______________________________________________
>> Genome maillist - [email protected]
>> https://lists.soe.ucsc.edu/mailman/listinfo/genome
>
>
--
Regards,
Peng
_______________________________________________
Genome maillist - [email protected]
https://lists.soe.ucsc.edu/mailman/listinfo/genome
