I am using pslReps executable which I downloaded as part of pslUtils from Kent's website for analyzing repeats and generating genome wide best alignments. Since the size of psl files are huge, I generated those psl files with -noHead option and then used sort in linux to generate a single file which is now in tab delimited format Now, I want to apply pslReps function on this file. since pslReps are not in psl format, it is giving me error. Is there any way through which I can use pslReps on this file. Thanks and regards.
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