reasonable suggestion, but the mailman interface is not configurable.
--b0b
On 7/20/2010 2:42 PM, Gregory Dougherty wrote:
> Thank you Robert.
>
> Would it be possible to add a link to that on the discussion list page?
> https://lists.soe.ucsc.edu/mailman/listinfo/genome
>
> Perhaps next to the link to the archives.
>
> Greg
>
> ----- Original Message -----
> From: "robert kuhn"<[email protected]>
> To: "Jim Kent"<[email protected]>
> Cc: "Gregory Dougherty"<[email protected]>, [email protected]
> Sent: Tuesday, July 20, 2010 2:23:48 PM GMT -06:00 US/Canada Central
> Subject: Re: [Genome] Finding where Primers hit
>
> hello, greg,
>
> there is a page of information about searching the site, including
> the mailing-list archives here:
>
> http://genome.ucsc.edu/contacts.html
>
> sorry it wasn't easier to find!
>
> best wishes,
>
> --b0b kuhn
> ucsc genome bioinformatics group
>
> On 7/20/2010 11:52 AM, Jim Kent wrote:
>> Please use In Silico PCR, which was designed just for this purpose.
>>
>> On Jul 20, 2010, at 4:51 PM, Gregory Dougherty wrote:
>>
>>> Hi all,
>>>
>>> I hope this isn't a FAQ, I couldn't find any way to search the archives.
>>>
>>> I am writing a program that takes pairs of PCR Primer sequences, and
>>> returns the products they will produce when used w/ human DNA. My first
>>> thought was to use BLAT to figure out where the primers match the genome.
>>> While this has worked well with test primers that are 20+ bases long, BLAT
>>> won't run on smaller Primers, and my users have Primers as small as 18
>>> bases.
>>>
>>> Is BLAT a reasonable tool to use for solving this problem? If we download
>>> the source, change the 20 base limit to 18, and then run that BLAT, will
>>> that work? Work only if the sequence is a perfect match? Fail miserably?
>>>
>>> May be OT: Can I get Blast to tell me WHERE the primer hit in the item it
>>> hit in? "Homo sapiens chromosome 17 genomic contig, GRCh37 reference
>>> primary assembly, Length=21169982" really isn't a very useful hit report.
>>>
>>> Thanks in advance,
>>>
>>> Greg
>>> _______________________________________________
>>> Genome maillist - [email protected]
>>> https://lists.soe.ucsc.edu/mailman/listinfo/genome
>>
>>
>> _______________________________________________
>> Genome maillist - [email protected]
>> https://lists.soe.ucsc.edu/mailman/listinfo/genome
> _______________________________________________
> Genome maillist - [email protected]
> https://lists.soe.ucsc.edu/mailman/listinfo/genome
_______________________________________________
Genome maillist - [email protected]
https://lists.soe.ucsc.edu/mailman/listinfo/genome
