Hi all,

I have a most likely beginner question: I am working with GenomeStudio
(Illumina) for some DNA sequences from a zebrafish sample. Sadly some
analyses only work with the "knownGene", "knownToRefSeq" and "kgXref" files.
These files are present in the annotations e.g. for human, mouse etc, but
not for zebrafish on UCSC.

So how to get these files? As far as I read these are auto generated. If I
install the software can I produce them myself?

Thanks in advice, Jochen

Ref: http://hgdownload.cse.ucsc.edu/goldenPath/danRer6/database/

 

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