I've been experimenting with gfServer on a few different platforms (Windows, Mandriva, etc.) and just ran into my first problem.
I've been able to compile and execute the gfServer on both of the previous platforms, but I'm currently trying to run it on Fedora 11 x64 and am having some problems. I start the server with the same files I've used elsewhere (which have worked on other platforms), but it now just stops at "Counting tiles in ..." and never progresses. The index is usually built within 15 minutes on comparable platforms; it's sat for over an hour now without getting past "counting tiles." It consumes RAM the same way as it previously did (~2.2GB for hg19), and it consistently consumes on core of the CPU the whole time. > gfServer start localhost 18000 -stepSize=5 /<directory>/hg19.2bit The only deviation I took from the standard "make" install was the removal of -Werror switches in one make file to get rid of an error as recommended at http://www.mail-archive.com/[email protected]/msg01674.html . Any help is appreciated. Jeff _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
