Hi Galt. Sorry for the delay. Here's a little more information: I'm running on Fedora 11 64-bit. I compiled gfServer (et al.) from source downloaded from the website: http://users.soe.ucsc.edu/~kent/src/ . I'm using version 3.4.
The error when compiling was in kjOwnLib/fuzzyFind.c. Here's the console output: > make ... ... ... K_WARN -Wall -Werror -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o fuzzyFind.o -c fuzzyFind.c cc1: warnings being treated as errors fuzzyFind.c: In function lumpHits: fuzzyFind.c:1049: error: proto.score may be used uninitialized in this function make[1]: *** [fuzzyFind.o] Error 1 make[1]: Leaving directory `/home/jeffreya/Desktop/blat/jkOwnLib' make: *** [all] Error 2 When I removed the -Werror switches (two in that file), everything compiled without an error. Thanks for taking a look at this. Jeff > Hi, Jeff! > > Where did you get the source code? > I'd like to know what exactly what version you are using. > > Also, what error message did you get before > removing the -Werror. > > We run gfServer on 64-bit CentOS 5.5. > > -Galt > > On 08/13/10 12:24, [email protected] wrote: >> I've been experimenting with gfServer on a few different platforms >> (Windows, Mandriva, etc.) and just ran into my first problem. >> >> I've been able to compile and execute the gfServer on both of the >> previous >> platforms, but I'm currently trying to run it on Fedora 11 x64 and am >> having some problems. I start the server with the same files I've used >> elsewhere (which have worked on other platforms), but it now just stops >> at >> "Counting tiles in ..." and never progresses. The index is usually built >> within 15 minutes on comparable platforms; it's sat for over an hour now >> without getting past "counting tiles." >> >> It consumes RAM the same way as it previously did (~2.2GB for hg19), and >> it consistently consumes on core of the CPU the whole time. >> >>> gfServer start localhost 18000 -stepSize=5 /<directory>/hg19.2bit >> >> The only deviation I took from the standard "make" install was the >> removal >> of -Werror switches in one make file to get rid of an error as >> recommended >> at http://www.mail-archive.com/[email protected]/msg01674.html . >> >> Any help is appreciated. >> >> Jeff >> >> >> >> _______________________________________________ >> Genome maillist - [email protected] >> https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
