Hey Michael, If you point me to this file (off list please), then I can get this problem diagnosed.
brian On Fri, Aug 13, 2010 at 3:38 PM, Michael Hoffman <[email protected]> wrote: > Hi, I am trying to run bedToBigBed on a large (220 MiB) BED file and get > a segfault: > > $ bedToBigBed segway.layered.bed hg18.chrom.sizes segway.bb > pass1 - making usageList (23 chroms): 371 millis > Segmentation fault > > I don't have problems on larger files of 449 MiB. This file is unusual, > however, because it has only 575 lines, but many many blocks on each line: > > $ wc segway.layered.bed > 575 6900 230250499 segway.layered.bed > > $ uname -a > Linux XXXXX.washington.edu 2.6.18-194.el5 #1 SMP Tue Mar 16 21:52:39 EDT > 2010 x86_64 x86_64 x86_64 GNU/Linux > > Can this be fixed? > > Thanks, > Michael Hoffman > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
