On Aug 19, 2010, at 4:41 PM, Duke wrote:
>> 
>> The same for bigBed (i.e. visibility=squish)
> 
> Well, it is not quite "same" as you said:
> 

:-) You're right, I meant you have to tune those parameters in track definition 
line
> 
> The Windowing function is set by windowingFunction, but the Display mode is 
> set by (as you mentioned) visibility. It is not ovious and I wish there is a 
> list of such commands.
> 

here you can find most of the wig (and bigWig) controls 
http://genome.ucsc.edu/goldenPath/help/wiggle.html
Also

http://genome.ucsc.edu/goldenPath/help/bigWig.html
http://genome.ucsc.edu/goldenPath/help/bigBed.html

http://genome.ucsc.edu/goldenPath/help/customTrack.html#TRACK

HTH

d


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