Take for example the output from kgXref for the kgID uc011azf.1 #kgID mRNA spID spDisplayID geneSymbol refseq protAcc description uc011azf.1 AK294778 B4DGU4 B4DGU4_HUMAN CTNNB1 NM_001904 NP_001895 beta-catenin
In this example, it lists NM_001904 as the associated refseq. However, the sequence for uc011azf.1 doesn't match up that well with the reference sequence listed here for NM_001904 http://www.ncbi.nlm.nih.gov/nuccore/148228165 Instead it matches up better with sequence listed for mRNA AK294778 http://www.ncbi.nlm.nih.gov/nuccore/194378309 Is the output for refseq meant to be more of a guide, or is there meant to be a correspondence between the refseq ID and the actual sequence in kgID? Thanks, Andrew _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
