Hi Andrew, Thank you for your interest in the UCSC Genome Browser. We are currently working on answering your question and hope to have a reply to you soon.
Thank you, Mary --------------------- Mary Goldman UCSC Bioinformatics Group On 8/23/10 3:19 PM, Andrew Yee wrote: > Take for example the output from kgXref for the kgID uc011azf.1 > > #kgID mRNA spID spDisplayID geneSymbol refseq protAcc description > uc011azf.1 AK294778 B4DGU4 B4DGU4_HUMAN CTNNB1 NM_001904 NP_001895 > beta-catenin > > In this example, it lists NM_001904 as the associated refseq. However, the > sequence for uc011azf.1 doesn't match up that well with the reference > sequence listed here for NM_001904 > http://www.ncbi.nlm.nih.gov/nuccore/148228165 > > Instead it matches up better with sequence listed for mRNA AK294778 > http://www.ncbi.nlm.nih.gov/nuccore/194378309 > > Is the output for refseq meant to be more of a guide, or is there meant to > be a correspondence between the refseq ID and the actual sequence in kgID? > > Thanks, > Andrew > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
