Hello Ben,

Recently a correction was made to the Custom track submission form to 
reject data that is out-of-range with respect to the reference genome. 
We realize this is causing inconvenience for some of our users and do 
apologize.


To correct your BED data, please use the following utility:

bedClip -
Remove lines from bed file that refer to off-chromosome places.
usage:
bedClip input.bed chrom.sizes output.bed
options:
-verbose=2 - set to get list of lines clipped and why


Downloaded pre-compiled from:

http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/
or
http://hgdownload.cse.ucsc.edu/admin/exe/macOSX.i386/


Please feel free to contact the mailing list support team again if you 
would like more assistance.

Warm regards,

Jen
UCSC Genome Browser Support

On 9/13/10 2:08 PM, Guillemette Benoit wrote:
> I've been trying to upload custom tracks in the Oct. 2003 (SGD/sacCer1) 
> assembly, but I am recieving the following message:
> Error line 214351 of custom track: chromEnd larger than chrom chr10 size 
> (745447>  745446)
> This seems to indicate that my track is too "long", but I've uploaded it 
> before, and it worked fine then. Has there been changes in the annotation of 
> the 2003 assembly? Is there a solution other than deleting the extra data 
> from my track file?
>
> Thnks in advance for your help,
>
> Ben
>
> *******************************
>
> BenoƮt Guillemette, Ph. D.
>
> Post-doctoral fellow
> Chromosome Biogenesis Laboratory
> Institute for Research in Immunology and Cancer (IRIC)
> Montreal, Qc, Canada
>
> TEL: 1-514-343-6111 ext.1.0659
> FAX: 1-514-343-7780
>
> EMAIL: benoit.guilleme...@umontreal.ca
>
> _______________________________________________
> Genome maillist  -  Genome@lists.soe.ucsc.edu
> https://lists.soe.ucsc.edu/mailman/listinfo/genome
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