Hello Ben, Recently a correction was made to the Custom track submission form to reject data that is out-of-range with respect to the reference genome. We realize this is causing inconvenience for some of our users and do apologize.
To correct your BED data, please use the following utility: bedClip - Remove lines from bed file that refer to off-chromosome places. usage: bedClip input.bed chrom.sizes output.bed options: -verbose=2 - set to get list of lines clipped and why Downloaded pre-compiled from: http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/ or http://hgdownload.cse.ucsc.edu/admin/exe/macOSX.i386/ Please feel free to contact the mailing list support team again if you would like more assistance. Warm regards, Jen UCSC Genome Browser Support On 9/13/10 2:08 PM, Guillemette Benoit wrote: > I've been trying to upload custom tracks in the Oct. 2003 (SGD/sacCer1) > assembly, but I am recieving the following message: > Error line 214351 of custom track: chromEnd larger than chrom chr10 size > (745447> 745446) > This seems to indicate that my track is too "long", but I've uploaded it > before, and it worked fine then. Has there been changes in the annotation of > the 2003 assembly? Is there a solution other than deleting the extra data > from my track file? > > Thnks in advance for your help, > > Ben > > ******************************* > > BenoƮt Guillemette, Ph. D. > > Post-doctoral fellow > Chromosome Biogenesis Laboratory > Institute for Research in Immunology and Cancer (IRIC) > Montreal, Qc, Canada > > TEL: 1-514-343-6111 ext.1.0659 > FAX: 1-514-343-7780 > > EMAIL: benoit.guilleme...@umontreal.ca > > _______________________________________________ > Genome maillist - Genome@lists.soe.ucsc.edu > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - Genome@lists.soe.ucsc.edu https://lists.soe.ucsc.edu/mailman/listinfo/genome