Hello Gundala, From where you are looking, go up one directory: http://hgdownload.cse.ucsc.edu/goldenPath/hg18/vsPanTro2/
You may also wish to view these maf files: http://hgdownload.cse.ucsc.edu/goldenPath/hg18/multiz28way/ I hope this is helpful to you. Please don't hesitate to contact us again if you require further assistance. Kayla Smith UCSC Genome Bioinformatics Group Gundala Viswanath wrote: > Dear all, > > Is there a way I can download all the pairwise alignment > of hg18 with all vertebrates, especially in chainnetted-MAF version? > > For convenience I'm also thinking whether I can download > the alignment in forms of 1 file per species pair. > > Currently at best I can find is in axtNet format and > they are separated into 1 file per chromosome (not 1 file per species). > > E.g: http://hgdownload.cse.ucsc.edu/goldenPath/hg18/vsPanTro2/axtNet/ > > Please kindly advice. > > - Gundala Viswanath > _______________________________________________ > Genome maillist - [email protected] > http://www.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] http://www.soe.ucsc.edu/mailman/listinfo/genome
