Hello Hubert,
These liftOver chains are now available on the download
sever. Thanks for bringing this to our attention.
Regards,
----------
Ann Zweig
UCSC Genome Bioinformatics Group
http://genome.ucsc.edu
Hubert Rogers wrote:
> Hi there,
>
> Conversion chains for Dm2 to the latest assemblies of several other
> Drosophila genomes are missing from the directory:
> ( http://hgdownload.cse.ucsc.edu/goldenPath/dm2/liftOver/ )
>
> although these conversions are available using the web-based liftOver.
>
> D.mel2 to Ana3
> D.mel2 to Ere2
> D.mel2 to Gri2
> D.mel2 to Moj3
> D.mel2 to Vir3
> D.mel2 to Yak2
>
> I know it is possible to convert dm2 to dm3, and then use dm3 chains, but
> are the dm2 chains for the above conversions also available to download?
>
> Thanks,
> Hubert
>
>
> Hubert Rogers
> PhD student (Supervisor: Dr. Sam Griffiths-Jones)
> Faculty of Life Sciences
> Michael Smith Building
> University of Manchester
> Oxford Road
> Manchester
> M13 9PT
> _______________________________________________
> Genome maillist - [email protected]
> http://www.soe.ucsc.edu/mailman/listinfo/genome
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