Hello Gundala, In many cases, we do have the gzipped pre-chaining psl alignments, but we don't usually make those available for download due to their size.
If you let us know which alignments you are interested in, we might be able to make them available to you. Note that the files will be in job-sized chunks (e.g. 10MB of some hg18 chrom vs. 10MB of some canFam2 chrom), not per-chrom like our axtNet or maf downloads. -- Brooke Rhead UCSC Genome Bioinformatics Group On 11/06/08 23:06, Gundala Viswanath wrote: > Dear all, > > Is there a way I can download the raw > BlastZ pairwise alignment from UCSC browser? > > By "raw" I mean, before chaining and netting. > > - Gundala > _______________________________________________ > Genome maillist - [email protected] > http://www.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] http://www.soe.ucsc.edu/mailman/listinfo/genome
