Dear Brooke, Thank you so much for your reply.
The raw blastz pairwise alignment I am looking for are "hg18" versus these: panTro2 rheMac2 mm8 rn4 canFam2 equCab1 bosTau3 monDom4 galGal3 danRer4 oryLat1 tetNig1 fr2 Truly need your help to make those available for download. All kind of download format are ok with me. - Gundala Viswanath Jakarta - Indonesia On Sat, Nov 8, 2008 at 8:09 AM, Brooke Rhead <[EMAIL PROTECTED]> wrote: > Hello Gundala, > > In many cases, we do have the gzipped pre-chaining psl alignments, but we > don't usually make those available for download due to their size. > > If you let us know which alignments you are interested in, we might be able > to make them available to you. > > Note that the files will be in job-sized chunks (e.g. 10MB of some hg18 > chrom vs. 10MB of some canFam2 chrom), not per-chrom like our axtNet or maf > downloads. > > -- > Brooke Rhead > UCSC Genome Bioinformatics Group > > > > On 11/06/08 23:06, Gundala Viswanath wrote: >> >> Dear all, >> >> Is there a way I can download the raw >> BlastZ pairwise alignment from UCSC browser? >> >> By "raw" I mean, before chaining and netting. >> >> - Gundala >> _______________________________________________ >> Genome maillist - [email protected] >> http://www.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] http://www.soe.ucsc.edu/mailman/listinfo/genome
