Hello Xu Jianzhen, Please see this previously answered mailing list question:
http://www.soe.ucsc.edu/pipermail/genome/2008-June/016497.html And this question about the annotated transcription start site tracks we offer: http://www.soe.ucsc.edu/pipermail/genome/2008-May/016357.html You can also manually retrieve start coordinates by selecting your gene prediction track of interest in the table browser (http://www.genome.ucsc.edu/cgi-bin/hgTables): group: Genes and Gene Prediction Tracks track: (I'll use UCSC Genes as an example) table: knownGene region: genome output format: selected fields from primary and related tables then click on "get output". This will take you to a menu where you can select any of: name, chrom, strand, txStart, cdsStart to include in the output. Hopefully this information was helpful and is enough to get you started. If you have further questions or require clarification feel free to contact the mailing list at [EMAIL PROTECTED] Regards, Pauline Fujita UCSC Genome Bioinformatics Group http://genome.ucsc.edu xu_jianzhen wrote: > hello,genome help > > I am wondering how could I get all the coordinates of transcritional start > site in human genome? The output file looks like:chr start end > strandchr20 1000 1000 -anyone can help?Regards,Xu JianzhenGIBH, CAS,China. > > > _______________________________________________ > Genome maillist - [email protected] > http://www.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] http://www.soe.ucsc.edu/mailman/listinfo/genome
