Hi Yan, Unfortunately, we do not have any immediate plans to create a TFBS track for the mouse. One thing you might try is our liftOver utility (http://genome.ucsc.edu/cgi-bin/hgLiftOver), to convert human TFBS coordinates to mouse coordinates.
As for your second question, all of the information on transcription factors is taken from the Transfac "Matrix" and "Factor" databases, version 7.0. These are available with a free registration at: http://www.gene-regulation.com/pub/databases.html Please let me know if you have any further questions. Matt On Wed, Nov 12, 2008 at 8:29 AM, Yan Xiang <[EMAIL PROTECTED]> wrote: > Hello Matt Weirauch, > > Based on the description of "HMR Conserved Transcription Factor > Binding Sites", each transcription factor binding site (TF-BS) on human > chromosome must have a corresponding TF-BS on Mouse chromosome and a > corresponding TF-BS on Rat chromosome. If this is true, I was wondering if > UCSC can provide the data for Mouse and Rat like Human for download. > > I also saw your reply to one user's question about Matrix mapping to > Transcription Factor and description of the transcription factor. Could you > let me know how you got these information or if you can also provide the > mapping infomation especially the description of the transcription factors? > > Best Regards, > > Yan Xiang > _______________________________________________ > Genome maillist - [email protected] > http://www.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] http://www.soe.ucsc.edu/mailman/listinfo/genome
